8RDT

Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with spiro-isoxazol based compound 8j

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SLS BEAMLINE X10SA
Synchrotron site	SLS
Beamline	X10SA
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-04-28
Detector	DECTRIS EIGER2 S 16M
Wavelength(s)	1.0000
Spacegroup name	P 21 21 21
Unit cell lengths	56.441, 59.488, 88.110
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	49.300 - 1.950
R-factor	0.20088
Rwork	0.199
R-free	0.24169
Structure solution method	FOURIER SYNTHESIS
RMSD bond length	0.009
RMSD bond angle	1.624
Data reduction software	XDS
Refinement software	REFMAC (5.8.0266)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	49.303	49.303	2.070
High resolution limit [Å]	1.950	5.810	1.950
Rmeas	0.106	0.044	1.817
Number of reflections	41768	1577	6715
<I/σ(I)>	10.67	37.71	1.05
Completeness [%]	99.9	99.9	99.6
Redundancy	7.01	6.75	7.19
CC(1/2)	0.999	0.999	0.524

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		293	0.4-0.6 M (NH4)H2PO4, ~17 mg/ml MSCI4 with 3 mM Thalidomide