8RCW
Crystal structure of the Mycobacterium tuberculosis regulator VirS (N-terminal fragment 4-208) in complex with the lead compound SMARt751
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-02-12 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9655 |
Spacegroup name | P 61 |
Unit cell lengths | 115.332, 115.332, 70.987 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.295 - 1.692 |
Rwork | 0.185 |
R-free | 0.21680 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.673 |
Data reduction software | autoPROC (1.0.5) |
Data scaling software | Aimless (0.7.13) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.295 | 1.767 |
High resolution limit [Å] | 1.692 | 1.692 |
Rmerge | 0.170 | 1.680 |
Rmeas | 0.179 | 1.778 |
Rpim | 0.056 | 0.576 |
Number of reflections | 51863 | 2593 |
<I/σ(I)> | 9.6 | |
Completeness [%] | 96.5 | 77.3 |
Redundancy | 10.1 | 9.4 |
CC(1/2) | 0.997 | 0.560 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 0.3 M sodium acetate trihydrate, 0.1 M Tris, pH 7.5, 8% (w/v) PEG 20,000, 8% (v/v) PEG 500 MME, pH7.5, protein:SMART751 ratio 1:1, in situ proteolysis with subtilisin, temperature 293K, vapor diffusion |