8QYT
Human Pyridoxine-5'-phosphate oxidase in complex with PLP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 11.2C |
Synchrotron site | ELETTRA |
Beamline | 11.2C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 82.480, 82.480, 59.190 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.600 - 1.690 |
R-factor | 0.17505 |
Rwork | 0.173 |
R-free | 0.21563 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.664 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.600 | 1.720 |
High resolution limit [Å] | 1.690 | 1.690 |
Rmerge | 1.443 | |
Rmeas | 0.050 | |
Number of reflections | 26324 | 1316 |
<I/σ(I)> | 30.2 | |
Completeness [%] | 100.0 | |
Redundancy | 18.4 | 18.8 |
CC(1/2) | 1.000 | 0.840 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 12% vv PEG 6000, 0.1M Sodium Citrate, 0.1M Lithium Sulfate |