8QW1
Human NDPK-C in complex with ADP and Mg2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-07 |
Detector | DECTRIS PILATUS3 X 2M |
Wavelength(s) | 0.8731 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 106.460, 116.310, 84.070 |
Unit cell angles | 90.00, 93.05, 90.00 |
Refinement procedure
Resolution | 42.011 - 2.100 |
Rwork | 0.172 |
R-free | 0.20450 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.641 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.011 | 2.150 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.184 | 1.509 |
Rmeas | 0.199 | 1.659 |
Number of reflections | 57087 | 3195 |
<I/σ(I)> | 10.01 | 1.72 |
Completeness [%] | 95.8 | 73.1 |
Redundancy | 6.6 | 5.9 |
CC(1/2) | 0.995 | 0.466 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 291 | 27% glycerol, 7% PEG 8000, 40 mM KH2PO4 |