8QT4
Crystal structure of human Sirt2 in complex with the super-slow substrate TNFn-6 and NAD+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-06 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.056, 74.847, 55.981 |
Unit cell angles | 90.00, 96.37, 90.00 |
Refinement procedure
Resolution | 55.640 - 1.550 |
R-factor | 0.1605 |
Rwork | 0.159 |
R-free | 0.18770 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.871 |
Data reduction software | autoPROC |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.640 | 1.580 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.078 | 0.795 |
Rmeas | 0.085 | 0.863 |
Rpim | 0.033 | 0.333 |
Total number of observations | 287234 | |
Number of reflections | 44829 | 2227 |
<I/σ(I)> | 14.2 | 2.8 |
Completeness [%] | 99.1 | |
Redundancy | 6.4 | 6.5 |
CC(1/2) | 0.998 | 0.794 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 25 % (w/v) PEG 3,350 in 0.1 M Bis-Tris pH 6.5 |