8Q6K
Human IgD Fab in complex with an orthosteric inhibitor of Phl p 7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-03-17 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.6199 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 65.740, 71.041, 122.173 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.750 - 2.100 |
R-factor | 0.2165 |
Rwork | 0.214 |
R-free | 0.25920 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.555 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.2_4158: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 61.090 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 3.335 | |
Rmeas | 0.320 | |
Rpim | 0.062 | 0.655 |
Number of reflections | 34198 | 2767 |
<I/σ(I)> | 9.5 | 1.2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 26.4 | 26.7 |
CC(1/2) | 0.998 | 0.611 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 15% PEG 8000, 0.1M sodium citrate and 0.05M ammonium sulfate |