8Q3C
Structure of Selenomonas ruminantium lactate dehydrogenase I85R mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM07 |
Synchrotron site | ESRF |
Beamline | BM07 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979507 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.290, 129.660, 133.410 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.810 - 3.100 |
R-factor | 0.2596 |
Rwork | 0.258 |
R-free | 0.28750 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.434 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.810 | 2.850 |
High resolution limit [Å] | 2.780 | 2.780 |
Rmeas | 0.140 | |
Rpim | 0.035 | 0.619 |
Number of reflections | 60734 | 4430 |
<I/σ(I)> | 10.12 | 0.36 |
Completeness [%] | 99.5 | 98.5 |
Redundancy | 7.05 | 6.35 |
CC(1/2) | 0.990 | 0.117 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M BisTris propane pH 7.5, 0.2 M NaNO3, 16 to 26 % PEG 3,350 (optimized from Molecular Dimensions PACT screen, condition 77). |