8PXV
Targeting extended blood antigens by Akkermansia muciniphila enzymes unveils a missing link for generating universal donor blood
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 96.260, 170.420, 171.940 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 54.320 - 2.500 |
R-factor | 0.1799 |
Rwork | 0.178 |
R-free | 0.21220 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.669 |
Data reduction software | xia2 |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.320 | 2.589 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.146 | |
Rmeas | 0.163 | |
Rpim | 0.069 | 0.658 |
Number of reflections | 93815 | 9509 |
<I/σ(I)> | 10.36 | 1.34 |
Completeness [%] | 95.3 | |
Redundancy | 4.8 | |
CC(1/2) | 0.995 | 0.457 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 293 | 11% PEG8000, 0.5 M NaCl, 0.1M NaCacodylate |