8PP2
Binary crystal structure of positively supercharged ferritin variant Ftn(pos) and native(K86Q) human heavy chain ferritin (Mg formate condition)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 4 |
Unit cell lengths | 126.802, 126.802, 175.598 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.061 - 2.001 |
Rwork | 0.203 |
R-free | 0.24680 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.509 |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.061 | 49.010 | 2.030 |
High resolution limit [Å] | 2.000 | 10.960 | 2.000 |
Rmerge | 0.173 | 0.048 | 1.164 |
Rmeas | 0.187 | 0.052 | 1.257 |
Rpim | 0.070 | 0.020 | 0.473 |
Number of reflections | 186148 | 1169 | 9136 |
<I/σ(I)> | 10.2 | ||
Completeness [%] | 99.9 | ||
Redundancy | 13.9 | 13.7 | 13.9 |
CC(1/2) | 0.998 | 0.999 | 0.824 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293.15 | reservoir: 0.19M Magnesium Formate Ftn(pos): 4 mg/mL in 50mM Tris pH 7.5 1 M NaCl Ftn(Wildtype): 4mg/mL in 50mM Tris pH 7.5 0.3 M NaCl 2 uL reservoir + 1uL Ftn(pos) + 1uL Ftn(Wildtype) added to coverslide in this order. |