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8P45

Crystal structure of human STING in complex with the agonist MD1202D

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-05-11
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9184
Spacegroup nameC 1 2 1
Unit cell lengths89.490, 77.980, 35.420
Unit cell angles90.00, 97.58, 90.00
Refinement procedure
Resolution44.350 - 3.230
R-factor0.2094
Rwork0.207
R-free0.25920
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.553
Data reduction softwareXDS (xdsapp v3.1.9)
Data scaling softwareXDS (xdsapp v3.1.9)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]44.3503.346
High resolution limit [Å]3.2303.230
Rmerge0.3001.940
Rmeas0.3142.096
Rpim0.0880.787
Number of reflections3917370
<I/σ(I)>8.21.22
Completeness [%]99.9100
Redundancy12.16.9
CC(1/2)0.9950.496
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP291200 mM sodium chloride; 100 mM HEPES pH 7.5; 20 % w/v PEG 4000; 10 mM spermine, 10 mM spermidine, 10mM ornithine, 10 mM 1,4-diaminobutane

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PDB entries from 2024-07-10

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