Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8OMZ

Wide inward-open unliganded UraA in complex with a conformation-selective synthetic nanobody

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2019-10-30
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.98
Spacegroup nameP 1 21 1
Unit cell lengths87.140, 118.110, 94.930
Unit cell angles90.00, 100.42, 90.00
Refinement procedure
Resolution29.530 - 3.500
R-factor0.2417
Rwork0.241
R-free0.25990
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5xls 1zvh
RMSD bond length0.001
RMSD bond angle0.387
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX (1.17.1-3660-000)
Refinement softwarePHENIX (1.17.1-3660-000)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]29.53015.6503.590
High resolution limit [Å]3.50011.0703.500
Rmerge0.0690.0310.654
Rmeas0.0720.0320.681
Number of reflections239215021755
<I/σ(I)>20.6749.924.64
Completeness [%]99.710099.9
Redundancy13.58311.60613.322
CC(1/2)1.0001.0000.984
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.429150 mM Tris, 50 mM magnesium acetate, 34% PEG400, 0.1% benzamidine hydrochloride

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon