8JYJ
Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with laccaic acid A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-06-27 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 61.836, 61.836, 83.624 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.720 - 2.010 |
R-factor | 0.2483 |
Rwork | 0.243 |
R-free | 0.29770 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.953 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.720 | 2.060 |
High resolution limit [Å] | 2.010 | 2.010 |
Rmerge | 0.067 | 1.373 |
Rmeas | 0.070 | 1.437 |
Rpim | 0.020 | 0.416 |
Total number of observations | 144092 | 9343 |
Number of reflections | 11427 | 807 |
<I/σ(I)> | 16.6 | 1.2 |
Completeness [%] | 99.9 | |
Redundancy | 12.6 | 11.6 |
CC(1/2) | 0.998 | 0.749 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.6 | 291 | 0.1M MES, 26%(v/v) PEG6000, 0.01 M Zinc Sulfate, 0.001 M MANGANESE CHLORIDE |