8J9D
Crystal structure of M61 peptidase (bestatin-bound) from Xanthomonas campestris
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | RRCAT INDUS-2 BEAMLINE PX-BL21 |
Synchrotron site | RRCAT INDUS-2 |
Beamline | PX-BL21 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-02 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.979490 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 105.008, 95.196, 144.489 |
Unit cell angles | 90.00, 104.47, 90.00 |
Refinement procedure
Resolution | 44.360 - 1.900 |
R-factor | 0.1722 |
Rwork | 0.171 |
R-free | 0.19090 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.727 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.600 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.066 | 0.395 |
Rmeas | 0.080 | 0.495 |
Rpim | 0.045 | 0.293 |
Number of reflections | 215479 | 9862 |
<I/σ(I)> | 13.4 | 2.3 |
Completeness [%] | 99.4 | 92.4 |
Redundancy | 2.9 | |
CC(1/2) | 0.997 | 0.828 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 8.5 | 294 | 0.1M Tris-Cl pH 8.5, 0.1M NaCl, 6-11% (w/v) PEG 4000 |