8HLY
Crystal structure of SIRT3 in complex with H3K23la peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-01 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97847 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 33.043, 84.763, 89.187 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.590 - 2.000 |
R-factor | 0.1605 |
Rwork | 0.156 |
R-free | 0.20260 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.714 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | REFMAC |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.593 | 2.070 |
High resolution limit [Å] | 1.998 | 1.998 |
Rmerge | 0.034 | 0.080 |
Rmeas | 0.048 | 0.113 |
Rpim | 0.034 | 0.080 |
Number of reflections | 25433 | 1294 |
<I/σ(I)> | 15.12 | 3.48 |
Completeness [%] | 95.9 | 72.33 |
Redundancy | 1.5 | 1 |
CC(1/2) | 0.996 | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 0.1 M BIS-TRIS pH at 6.5, 28% (w/v) Polyethylene glycol monomethyl ether 2000 |