8HHQ
Covalent bond formation between cysteine of PPARg-LBD and iodoacetic acid
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU R-AXIS II |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2017-08-11 |
| Detector | RIGAKU RAXIS II |
| Wavelength(s) | 1.0 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 92.142, 59.802, 117.956 |
| Unit cell angles | 90.00, 103.22, 90.00 |
Refinement procedure
| Resolution | 47.930 - 2.400 |
| R-factor | 0.21274 |
| Rwork | 0.210 |
| R-free | 0.26627 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2vv3 |
| RMSD bond length | 0.013 |
| RMSD bond angle | 1.527 |
| Data reduction software | d*TREK |
| Data scaling software | d*TREK |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 47.930 | 2.490 |
| High resolution limit [Å] | 2.400 | 2.400 |
| Number of reflections | 23224 | 2399 |
| <I/σ(I)> | 15.3 | 4 |
| Completeness [%] | 96.0 | |
| Redundancy | 3.6 | |
| CC(1/2) | 1.000 | 0.954 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 293 | 0.1 M Tris-HCl pH 7.4, 0.8 M sodium citrate |






