8HHQ
Covalent bond formation between cysteine of PPARg-LBD and iodoacetic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU R-AXIS II |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-08-11 |
Detector | RIGAKU RAXIS II |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 92.142, 59.802, 117.956 |
Unit cell angles | 90.00, 103.22, 90.00 |
Refinement procedure
Resolution | 47.930 - 2.400 |
R-factor | 0.21274 |
Rwork | 0.210 |
R-free | 0.26627 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vv3 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.527 |
Data reduction software | d*TREK |
Data scaling software | d*TREK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.930 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Number of reflections | 23224 | 2399 |
<I/σ(I)> | 15.3 | 4 |
Completeness [%] | 96.0 | |
Redundancy | 3.6 | |
CC(1/2) | 1.000 | 0.954 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.4 | 293 | 0.1 M Tris-HCl pH 7.4, 0.8 M sodium citrate |