8HFM
Crystal Structure of Mycobacterium smegmatis MshC
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.911648 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 69.810, 69.810, 236.011 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.320 - 2.410 |
R-factor | 0.2077 |
Rwork | 0.206 |
R-free | 0.23780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3c8z |
RMSD bond length | 0.004 |
RMSD bond angle | 0.642 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 69.810 | 2.540 |
High resolution limit [Å] | 2.410 | 2.410 |
Rmerge | 0.172 | 2.385 |
Rmeas | 0.175 | 2.431 |
Rpim | 0.034 | 0.468 |
Total number of observations | 617009 | 89091 |
Number of reflections | 23600 | 3341 |
<I/σ(I)> | 15.3 | 1.7 |
Completeness [%] | 100.0 | |
Redundancy | 26.1 | 26.7 |
CC(1/2) | 0.999 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.1 | 293 | Holo protein at 10 mg/mL in 10 mM Tris pH 7, 100 mM NaCl, 2.5 mM 2-mercaptoethanol was mixed with 25 mM CaCl2, 25 mM MgCl2, PEG8000 5-8% (w/v), Morpheus buffer system 2 pH 7.1, ethylene glycol 20% (v/v) in a 1:1 ratio. Suitable crystals were immersed in mother liquor supplemented with 22% (v/v) ethylene glycol as a cryoprotectant and flash frozen in liquid nitrogen for subsequent data collection. |