8HFH
CENP-E motor domain in complex with AMPPNP and Mg2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2020-06-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 98.576, 46.215, 73.718 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.870 - 1.800 |
R-factor | 0.1654 |
Rwork | 0.161 |
R-free | 0.20580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6m4i |
RMSD bond length | 0.011 |
RMSD bond angle | 1.683 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 73.718 | 10.000 | 1.900 |
High resolution limit [Å] | 1.800 | 5.690 | 1.800 |
Rmerge | 0.043 | 0.501 | |
Rmeas | 0.119 | 0.047 | 0.573 |
Rpim | 0.047 | 0.019 | 0.273 |
Number of reflections | 31976 | 1103 | 4588 |
<I/σ(I)> | 12.3 | 14.3 | 1.5 |
Completeness [%] | 99.9 | 97.6 | 99.8 |
Redundancy | 6.3 | 5.8 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 277 | MES, PEG3350, PIPES-NaOH, NaCl, MgCl2, EGTA, TCEP, sucrose, CENP-E, AMPPNP |