8H6I
The crystal structure of SARS-CoV-2 3C-like protease Double Mutant (L50F and E166V) in complex with a traditional Chinese Medicine Inhibitors
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-09-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.978490 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 115.038, 53.703, 44.505 |
Unit cell angles | 90.00, 102.93, 90.00 |
Refinement procedure
Resolution | 43.380 - 1.900 |
R-factor | 0.2007 |
Rwork | 0.198 |
R-free | 0.22730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7vic |
Data reduction software | autoPROC |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.380 | 43.380 | 2.010 |
High resolution limit [Å] | 1.900 | 5.670 | 1.900 |
Rmerge | 0.075 | 0.095 | 0.426 |
Rmeas | 0.082 | 0.104 | 0.464 |
Number of reflections | 20854 | 816 | 3279 |
<I/σ(I)> | 12.15 | 18.44 | 5.02 |
Completeness [%] | 98.8 | 97.7 | 97.3 |
Redundancy | 6.502 | 6.27 | 6.263 |
CC(1/2) | 0.996 | 0.990 | 0.948 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 293 | 0.2% w/v Lidocaine hydrochloride monohydrate, 0.2% w/v Procaine hydrochloride, 0.2% w/v Proparacaine hydrochloride, 0.2% w/v tetracaine hydrochloride, 0.1 M Buffer System 2 pH 7.5 (sodium HEPES, MOPS acid), 20% v/v ethylene glycol, 10% w/v PEG 8,000 |