8GVM
The structure of azide-bound cytochrome C oxidase determined using the crystals exposed to 20 mm azide solution for 4 days
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 50 |
Detector technology | CCD |
Collection date | 2014-07-03 |
Detector | RAYONIX MX225-HS |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 183.405, 206.272, 177.609 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.969 - 1.851 |
R-factor | 0.1652 |
Rwork | 0.164 |
R-free | 0.18810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5b1a |
RMSD bond length | 0.019 |
RMSD bond angle | 1.736 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | DM |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 200.000 | 1.870 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.092 | 1.082 |
Rpim | 0.022 | 0.391 |
Number of reflections | 564234 | 13836 |
<I/σ(I)> | 42.5 | 3.3 |
Completeness [%] | 99.7 | 99.2 |
Redundancy | 12.8 | 8.2 |
CC(1/2) | 0.879 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 6.8 | 277 | PEG 4000, SODIUM PHOSPHATE BUFFER PH 6.8 |