8GID
Crystal structure of a strain-transcending single-component Plasmodium falciparum AMA1-RON2L structure-based design immunogen 1 (SBD1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 131.620, 38.340, 71.970 |
Unit cell angles | 90.00, 95.14, 90.00 |
Refinement procedure
Resolution | 19.810 - 1.800 |
R-factor | 0.18 |
Rwork | 0.178 |
R-free | 0.20920 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.788 |
Data reduction software | XDS (v Feb 5, 2021) |
Data scaling software | XSCALE (v Feb 5, 2021) |
Phasing software | PHENIX (v1.20.1-4487) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.810 | 1.864 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.070 | 0.752 |
Rmeas | 0.083 | 0.893 |
Rpim | 0.045 | 0.476 |
Number of reflections | 32748 | 3112 |
<I/σ(I)> | 12.22 | 2.02 |
Completeness [%] | 97.0 | 96.48 |
Redundancy | 3.4 | 3.4 |
CC(1/2) | 0.998 | 0.663 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 0.2 M Ammonium sulfate, 20% (w/v) PEG 3350 |