8FTU
Crystal structure of the SNARE Use1 bound to Dsl1 complex subunits Sec39 and Dsl1, Revised Use1 structure
Replaces: 6WC4Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-14 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97932 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 240.790, 87.846, 161.431 |
Unit cell angles | 90.00, 107.61, 90.00 |
Refinement procedure
Resolution | 29.600 - 5.730 |
R-factor | 0.2782 |
Rwork | 0.276 |
R-free | 0.29800 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.856 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.17.1-3660-000) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.601 | 29.601 | 6.645 |
High resolution limit [Å] | 5.726 | 12.006 | 5.726 |
Rmerge | 0.115 | 0.052 | 1.814 |
Rmeas | 0.135 | 0.061 | 2.171 |
Rpim | 0.070 | 0.032 | 1.184 |
Number of reflections | 7053 | 1007 | 1008 |
<I/σ(I)> | 10.7 | 26.4 | 1.1 |
Completeness [%] | 74.7 | 100 | 29.8 |
Redundancy | 6.8 | 6.7 | 6.4 |
CC(1/2) | 0.997 | 0.997 | 0.319 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 295 | 0.1 M Tris, pH 7.5, 0.1 M NaCl, 8% (w/v) PEG 3350, 10% (v/v) ethylene glycol, 1 mM dithiothreitol. Cryoprotected with 30% (v/v) ethylene glycol |