8FSD
P130R mutant of soybean SHMT8 in complex with PLP-glycine and formylTHF
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2019-08-18 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 86.565, 90.480, 146.183 |
Unit cell angles | 90.00, 90.39, 90.00 |
Refinement procedure
Resolution | 47.410 - 1.490 |
R-factor | 0.1857 |
Rwork | 0.184 |
R-free | 0.21340 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 1.018 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.640 | 1.520 |
High resolution limit [Å] | 1.490 | 1.490 |
Rmerge | 0.084 | 1.464 |
Rmeas | 0.099 | 1.764 |
Rpim | 0.052 | 0.968 |
Number of reflections | 361249 | 16711 |
<I/σ(I)> | 7 | 0.6 |
Completeness [%] | 98.5 | 92.4 |
Redundancy | 3.5 | 3.2 |
CC(1/2) | 0.997 | 0.336 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.18-0.25 TMAO 0.1 M TRIS HCL 21-23% W/V PEG MME 2000 |