8FJC
Structure of the catalytic domain of Streptococcus mutans GtfB complexed to acarbose in tetragonal space group P4322
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-11 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 43 2 2 |
Unit cell lengths | 149.546, 149.546, 303.085 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 83.715 - 2.500 |
R-factor | 0.188 |
Rwork | 0.186 |
R-free | 0.22790 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.241 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 86.720 | 2.540 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.252 | |
Rmeas | 0.266 | |
Rpim | 0.084 | 0.595 |
Number of reflections | 119150 | 5822 |
<I/σ(I)> | 9.3 | 1.8 |
Completeness [%] | 100.0 | 100 |
Redundancy | 10.2 | 10.8 |
CC(1/2) | 0.990 | 0.446 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 295 | 2 M ammonium sulfate, 0.1 M Bis-Tris; tetragonal apo crystals were soaked with acarbose at a 1:10 molar ratio for 5-10 mins (stock solution of 100 mM in water; final concentration 1-2 mM) |