8FHY
Crystal structure of the SARS-CoV-2 receptor binding domain in complex with neutralizing antibody WRAIR-5021
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 118.919, 84.127, 119.859 |
Unit cell angles | 90.00, 113.68, 90.00 |
Refinement procedure
Resolution | 99.940 - 2.530 |
R-factor | 0.197 |
Rwork | 0.195 |
R-free | 0.25620 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.554 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 109.800 | 2.580 |
High resolution limit [Å] | 2.530 | 2.530 |
Number of reflections | 71266 | 3598 |
<I/σ(I)> | 11.4 | |
Completeness [%] | 97.8 | |
Redundancy | 6.6 | |
CC(1/2) | 0.996 | 0.625 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M Sodium malonate pH 7.0, 20% w/v Polyethylene glycol 3,350 |