8F8Y
PHF2 (PHD+JMJ) in Complex with VRK1 N-Terminal Peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-04 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 74.406, 84.065, 105.215 |
Unit cell angles | 90.00, 103.99, 90.00 |
Refinement procedure
Resolution | 38.870 - 3.060 |
R-factor | 0.1972 |
Rwork | 0.195 |
R-free | 0.24900 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.001 |
RMSD bond angle | 0.372 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.870 | 3.160 |
High resolution limit [Å] | 3.060 | 3.060 |
Rmerge | 0.187 | 0.795 |
Rpim | 0.136 | 0.624 |
Number of reflections | 20652 | 1755 |
<I/σ(I)> | 4.4 | 0.8 |
Completeness [%] | 86.3 | 74.3 |
Redundancy | 2.6 | |
CC(1/2) | 0.967 | 0.464 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.3 | 292 | 2.5M Ammonium Sulfate 90mM Bis-Tris Propane, pH 6.3 4% Pentaerythritol ethoxylate (3/4 EO/OH) |