8F7L
Human NAMPT in complex with substrate NAM and small molecule activator ZN-29-S
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-12-01 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.888, 106.997, 83.603 |
Unit cell angles | 90.00, 96.88, 90.00 |
Refinement procedure
Resolution | 65.580 - 2.200 |
R-factor | 0.2279 |
Rwork | 0.226 |
R-free | 0.26420 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.977 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.16) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 65.580 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.113 | 0.396 |
Rmeas | 0.132 | 0.478 |
Rpim | 0.068 | 0.263 |
Total number of observations | 200876 | 14322 |
Number of reflections | 53951 | 4609 |
<I/σ(I)> | 6.8 | 2.7 |
Completeness [%] | 99.9 | |
Redundancy | 3.7 | 3.1 |
CC(1/2) | 0.989 | 0.867 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 290 | 0.1 M Tris-HCl, pH 8.5, 0.2M NaCl, 20% glycerol and 13-18% PEG 3350 |