8EKO
Sperm whale myoglobin mutant L29H F33W F43H (F33W CuBMb)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.059, 48.070, 77.739 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.610 - 1.340 |
R-factor | 0.1406 |
Rwork | 0.139 |
R-free | 0.16420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fwy |
RMSD bond length | 0.006 |
RMSD bond angle | 0.959 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.610 | 1.390 |
High resolution limit [Å] | 1.340 | 1.340 |
Rmerge | 0.192 | 0.057 |
Rmeas | 0.027 | 0.080 |
Number of reflections | 34356 | 3381 |
<I/σ(I)> | 19.35 | |
Completeness [%] | 99.9 | 99.71 |
Redundancy | 2 | 2 |
CC(1/2) | 0.999 | 0.987 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | F33W CuBMb (1.0 mM) in 100 mM tris pH 8, (pH adjusted H2SO4), was mixed 1:3 with well buffer (0.1 M sodium cacodylate pH 6.5, 0.2 M sodium acetate trihydrate with 30% w/v polyethylene glycol 8000) using the hanging drop method with 300 uL well buffer in the well of the crystallization tray. Crystals obtained by this method were soaked with 10 eq CuSO4 in a mixture of F33W CuBMb and well buffer consistent with the original drop conditions to avoid dissolving the crystals and subsequently with 15eq potassium cyanide, in a mixture of E-F33W-CuBMb and well buffer using pH 7.0 sodium cacodylate |