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8EKO

Sperm whale myoglobin mutant L29H F33W F43H (F33W CuBMb)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-06-14
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths40.059, 48.070, 77.739
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.610 - 1.340
R-factor0.1406
Rwork0.139
R-free0.16420
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4fwy
RMSD bond length0.006
RMSD bond angle0.959
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.6101.390
High resolution limit [Å]1.3401.340
Rmerge0.1920.057
Rmeas0.0270.080
Number of reflections343563381
<I/σ(I)>19.35
Completeness [%]99.999.71
Redundancy22
CC(1/2)0.9990.987
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5277F33W CuBMb (1.0 mM) in 100 mM tris pH 8, (pH adjusted H2SO4), was mixed 1:3 with well buffer (0.1 M sodium cacodylate pH 6.5, 0.2 M sodium acetate trihydrate with 30% w/v polyethylene glycol 8000) using the hanging drop method with 300 uL well buffer in the well of the crystallization tray. Crystals obtained by this method were soaked with 10 eq CuSO4 in a mixture of F33W CuBMb and well buffer consistent with the original drop conditions to avoid dissolving the crystals and subsequently with 15eq potassium cyanide, in a mixture of E-F33W-CuBMb and well buffer using pH 7.0 sodium cacodylate

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PDB entries from 2024-10-30

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