8EBL
Structure of KLHDC2 substrate binding domain bound to C-degron from EPHB2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 49.480, 84.482, 90.729 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.440 - 1.370 |
R-factor | 0.1502 |
Rwork | 0.149 |
R-free | 0.17910 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6do2 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.420 |
High resolution limit [Å] | 1.370 | 2.950 | 1.370 |
Rmerge | 0.039 | 0.033 | 0.617 |
Rmeas | 0.043 | 0.037 | 0.672 |
Rpim | 0.018 | 0.015 | 0.264 |
Total number of observations | 906211 | ||
Number of reflections | 149088 | 15505 | 14577 |
<I/σ(I)> | 10.3 | ||
Completeness [%] | 95.8 | 98.2 | 93.8 |
Redundancy | 6.1 | 6 | 6.3 |
CC(1/2) | 0.989 | 0.863 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 10-15% PEG3350, 0.2M NaSCN, 0.1 M Bis-Tris Propane, pH = 7.5 |