8E8I
Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 103 |
Detector technology | CCD |
Collection date | 2021-06-10 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.645, 81.232, 110.179 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.610 - 1.490 |
R-factor | 0.1811 |
Rwork | 0.179 |
R-free | 0.21140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6p2s |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.610 | 1.510 |
High resolution limit [Å] | 1.490 | 1.490 |
Rmerge | 0.099 | 0.560 |
Number of reflections | 72099 | 10526 |
<I/σ(I)> | 13.5 | 2.9 |
Completeness [%] | 96.5 | 83.93 |
Redundancy | 8.2 | 6.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.8 | 298 | 0.2 M ammonium acetate, 15% PEG 1000, 0.1 M sodium citrate |