8E7A
Crystal structure of the p53 (Y107H) core domain orthorhombic P form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 291 |
Detector technology | PIXEL |
Collection date | 2022-06-06 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9786 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 51.140, 109.484, 33.865 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.370 - 1.300 |
R-factor | 0.1465 |
Rwork | 0.145 |
R-free | 0.17420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1tsr |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.8) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.330 | 46.330 | 1.320 |
High resolution limit [Å] | 1.300 | 7.000 | 1.300 |
Rmerge | 0.077 | 0.033 | 1.283 |
Total number of observations | 330751 | 2130 | 16930 |
Number of reflections | 47595 | 378 | 2339 |
<I/σ(I)> | 11.8 | 36.2 | 1.5 |
Completeness [%] | 99.7 | 99 | 98.7 |
Redundancy | 6.9 | 5.6 | 7.2 |
CC(1/2) | 0.999 | 0.999 | 0.605 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 30 % (w/v) PEG 2000 MME, 100 mM potassium thiocyanate |