Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DYK

Room temperature neutron structure of a fluorescent Ag8 cluster templated by a multistranded DNA scaffold

Experimental procedure
Experimental methodLAUE
Source typeSPALLATION SOURCE
Source detailsORNL Spallation Neutron Source BEAMLINE MANDI
Synchrotron siteORNL Spallation Neutron Source
BeamlineMANDI
Temperature [K]293
Detector technologyAREA DETECTOR
Collection date2021-05-07
DetectorORNL ANGER CAMERA
Wavelength(s)2.0-4.0
Spacegroup nameP 41 21 2
Unit cell lengths33.568, 33.568, 63.741
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution12.260 - 2.100
R-factor0.2325
Rwork0.226
R-free0.28680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6niz
RMSD bond length0.006
RMSD bond angle0.795
Data reduction softwareMantid
Data scaling softwareLAUENORM
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1-4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]12.2602.175
High resolution limit [Å]2.1002.100
Rmerge0.1460.264
Rmeas0.1590.290
Rpim0.0590.115
Number of reflections2315216
<I/σ(I)>10.53.77
Completeness [%]96.595.15
Redundancy6.25.6
CC(1/2)0.9910.328
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62931.5 mM A2C4, 9mM AgNO3, 70 mM cacodylate buffer (pH 6), 2-methyl-2,4-pentanediol (MPD)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon