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8DXB

HIV-1 reverse transcriptase/rilpivirine with bound fragment 5-fluoroindole-2-carboxylic acid at the NNRTI Adjacent site

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2019-04-19
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.0
Spacegroup nameC 1 2 1
Unit cell lengths162.618, 73.128, 109.240
Unit cell angles90.00, 100.62, 90.00
Refinement procedure
Resolution36.560 - 2.100
R-factor0.2135
Rwork0.213
R-free0.23490
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4g1q
RMSD bond length0.003
RMSD bond angle0.619
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (dev_3051)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.140
High resolution limit [Å]2.1005.7002.100
Rmerge0.0490.0350.606
Rmeas0.0570.0410.704
Rpim0.0290.0200.356
Total number of observations277784
Number of reflections7288338013565
<I/σ(I)>9.3
Completeness [%]98.599.397.7
Redundancy3.83.73.8
CC(1/2)0.9980.731
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5277PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFREL NKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIF QSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWT VQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYD PSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET WWTEYWQATWIPEWEFVNTPPLVKLWYQ

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PDB entries from 2024-08-07

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