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8DW7

DNA glycosylase MutY variant N146S in complex with DNA containing the transition state analog 1N paired with d(8-oxo-G)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-06
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1.11585
Spacegroup nameP 1 21 1
Unit cell lengths48.890, 137.210, 74.160
Unit cell angles90.00, 101.00, 90.00
Refinement procedure
Resolution72.800 - 1.960
R-factor0.2038
Rwork0.203
R-free0.23430
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6u7t
RMSD bond length0.020
RMSD bond angle1.463
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]72.8002.010
High resolution limit [Å]1.9601.960
Rmerge0.068
Number of reflections1286369334
<I/σ(I)>0.089
Completeness [%]94.7
Redundancy3.14
CC(1/2)0.9980.102
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293.13PEG 4000, calcium acetate, ethylene glycol, Tris.HCl, b-mercaptoethanol

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PDB entries from 2024-07-17

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