8DTJ
Human NAMPT in complex with small molecule activator ZN-43-S
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-12-01 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9787 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.499, 107.483, 83.399 |
Unit cell angles | 90.00, 96.64, 90.00 |
Refinement procedure
Resolution | 19.668 - 2.118 |
R-factor | 0.2177 |
Rwork | 0.216 |
R-free | 0.24600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2e5d |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.840 | 19.840 | 2.180 |
High resolution limit [Å] | 2.118 | 9.230 | 2.120 |
Rmerge | 0.084 | 0.039 | 0.499 |
Total number of observations | 2436 | 7200 | |
Number of reflections | 59407 | 680 | 3923 |
<I/σ(I)> | 9.8 | 26.5 | 1.4 |
Completeness [%] | 98.5 | 89.5 | 84 |
Redundancy | 3.7 | 3.6 | 1.8 |
CC(1/2) | 0.997 | 0.996 | 0.742 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 290 | 0.1 M Tris-HCl, pH 8.5, 0.2 M NaCl, 20% glycerol and 13-18% PEG 3350 |