8DHW
Treponema lecithinolyticum beta-glucuronidase in complex with a UNC4917-glucuronide conjugate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-08-02 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.03319 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 94.485, 94.485, 287.607 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.130 - 1.750 |
R-factor | 0.1738 |
Rwork | 0.173 |
R-free | 0.21150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6bjq |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.130 | 49.130 | 1.780 |
High resolution limit [Å] | 1.750 | 9.590 | 1.750 |
Rmerge | 0.087 | 0.045 | 1.291 |
Rmeas | 0.092 | 0.048 | 1.478 |
Rpim | 0.028 | 0.015 | 0.700 |
Total number of observations | 1317703 | 9250 | 24785 |
Number of reflections | 131523 | 975 | 6096 |
<I/σ(I)> | 14.4 | 41.7 | 1 |
Completeness [%] | 99.7 | 99.5 | 95.3 |
Redundancy | 10 | 9.5 | 4.1 |
CC(1/2) | 0.999 | 0.999 | 0.465 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293.15 | 2.4 M ammonium sulfate, 0.1 M MOPS |