Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DH3

T7 RNA polymerase elongation complex with unnatural base dPa

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.1
Synchrotron siteALS
Beamline5.0.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-09-28
DetectorDECTRIS PILATUS3 2M
Wavelength(s)1
Spacegroup nameP 1
Unit cell lengths79.067, 86.271, 201.967
Unit cell angles89.70, 86.01, 69.45
Refinement procedure
Resolution47.980 - 3.000
R-factor0.2477
Rwork0.247
R-free0.27550
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)8dh0
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHENIX (1.19)
Refinement softwarePHENIX (1.19)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.98047.9802.980
High resolution limit [Å]2.93016.0502.930
Rmerge0.1140.0262.204
Rmeas0.1340.0302.580
Rpim0.0710.0161.330
Total number of observations371631229619142
Number of reflections1053826155176
<I/σ(I)>5.928.10.4
Completeness [%]98.49498.1
Redundancy3.53.73.7
CC(1/2)0.9980.9990.306
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.129810% PEG 8000, 8% glycerol, 5 mM B-mercaptoethanol, 100 mM Tris pH 8.1

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon