Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DEK

The structure of the glycopeptidase catalytic domain including the linker of Amuc_1438

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-002
Temperature [K]100
Detector technologyPIXEL
Collection date2020-03-20
DetectorDECTRIS PILATUS 200K
Wavelength(s)1.54187
Spacegroup nameP 21 21 21
Unit cell lengths71.233, 91.471, 161.674
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution24.920 - 2.500
R-factor0.2342
Rwork0.232
R-free0.28310
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.449
Phasing softwareSHARP
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]25.0002.540
High resolution limit [Å]2.5002.500
Rpim0.0430.195
Number of reflections366341773
<I/σ(I)>15.2
Completeness [%]98.7
Redundancy4.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2910.2M (NH4)2PO4, 20% (W/V) peg3350, and 0,1M bicine, pH 9.0

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon