8DEK
The structure of the glycopeptidase catalytic domain including the linker of Amuc_1438
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-002 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-20 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54187 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.233, 91.471, 161.674 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.920 - 2.500 |
R-factor | 0.2342 |
Rwork | 0.232 |
R-free | 0.28310 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.449 |
Phasing software | SHARP |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.540 |
High resolution limit [Å] | 2.500 | 2.500 |
Rpim | 0.043 | 0.195 |
Number of reflections | 36634 | 1773 |
<I/σ(I)> | 15.2 | |
Completeness [%] | 98.7 | |
Redundancy | 4.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2M (NH4)2PO4, 20% (W/V) peg3350, and 0,1M bicine, pH 9.0 |