8DEK
The structure of the glycopeptidase catalytic domain including the linker of Amuc_1438
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-002 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-03-20 |
| Detector | DECTRIS PILATUS 200K |
| Wavelength(s) | 1.54187 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 71.233, 91.471, 161.674 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 24.920 - 2.500 |
| R-factor | 0.2342 |
| Rwork | 0.232 |
| R-free | 0.28310 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.002 |
| RMSD bond angle | 0.449 |
| Phasing software | SHARP |
| Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 25.000 | 2.540 |
| High resolution limit [Å] | 2.500 | 2.500 |
| Rpim | 0.043 | 0.195 |
| Number of reflections | 36634 | 1773 |
| <I/σ(I)> | 15.2 | |
| Completeness [%] | 98.7 | |
| Redundancy | 4.1 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2M (NH4)2PO4, 20% (W/V) peg3350, and 0,1M bicine, pH 9.0 |






