8DB8
Adenosine/guanosine nucleoside hydrolase bound to ImH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.977 |
Spacegroup name | P 1 |
Unit cell lengths | 51.025, 76.480, 86.636 |
Unit cell angles | 75.48, 81.67, 86.50 |
Refinement procedure
Resolution | 37.380 - 2.210 |
R-factor | 0.2226 |
Rwork | 0.221 |
R-free | 0.26630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold model |
RMSD bond length | 0.004 |
RMSD bond angle | 0.726 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.380 | 2.290 |
High resolution limit [Å] | 2.210 | 2.210 |
Rmerge | 0.114 | 0.571 |
Rmeas | 0.123 | 0.682 |
Rpim | 0.044 | 0.599 |
Number of reflections | 56341 | 5733 |
<I/σ(I)> | 14 | 1.4 |
Completeness [%] | 89.7 | 91 |
Redundancy | 7.8 | 7.8 |
CC(1/2) | 0.999 | 0.646 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 290 | 0.2 M ammonium sulfate, 25% PEG-3350, and 0.1 M Bis-tris, pH 5.5 |