Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8DB8

Adenosine/guanosine nucleoside hydrolase bound to ImH

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-12-03
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.977
Spacegroup nameP 1
Unit cell lengths51.025, 76.480, 86.636
Unit cell angles75.48, 81.67, 86.50
Refinement procedure
Resolution37.380 - 2.210
R-factor0.2226
Rwork0.221
R-free0.26630
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)AlphaFold model
RMSD bond length0.004
RMSD bond angle0.726
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.3802.290
High resolution limit [Å]2.2102.210
Rmerge0.1140.571
Rmeas0.1230.682
Rpim0.0440.599
Number of reflections563415733
<I/σ(I)>141.4
Completeness [%]89.791
Redundancy7.87.8
CC(1/2)0.9990.646
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2900.2 M ammonium sulfate, 25% PEG-3350, and 0.1 M Bis-tris, pH 5.5

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon