8D6M
Nanorana parkeri saxiphilin:STX (co-crystal)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.033167 |
Spacegroup name | H 3 |
Unit cell lengths | 228.848, 228.848, 67.224 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.550 - 2.000 |
R-factor | 0.1899 |
Rwork | 0.188 |
R-free | 0.22000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8d6g |
RMSD bond length | 0.011 |
RMSD bond angle | 1.023 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.550 | 2.071 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.055 | |
Number of reflections | 88641 | 8856 |
<I/σ(I)> | 14.11 | 1.11 |
Completeness [%] | 99.9 | |
Redundancy | 5.2 | |
CC(1/2) | 0.998 | 0.637 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 277.15 | 20-25% v/v PEG400, 4-5% w/v PGA-LM, 100-200 mM sodium acetate, pH 5.0, STX:NpSxph molar ratio 1.2:1 |