8D35
Crystal structure of SARS-CoV-2 main protease (Mpro) C145A mutant in complex with peptide from human tRNA methyltransferase TRMT1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-01 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.920219 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.787, 100.029, 103.252 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.340 - 1.900 |
R-factor | 0.1901 |
Rwork | 0.189 |
R-free | 0.22440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7mgs |
RMSD bond length | 0.007 |
RMSD bond angle | 0.841 |
Data reduction software | XDS (Jan 31, 2020) |
Data scaling software | XDS (Jan 10, 2022) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.340 | 1.968 |
High resolution limit [Å] | 1.900 | 1.900 |
Number of reflections | 55694 | 5409 |
<I/σ(I)> | 9.7 | 1.47 |
Completeness [%] | 99.1 | 98.34 |
Redundancy | 13.8 | 14 |
CC(1/2) | 0.997 | 0.656 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | 20-21.5% PEG3350, 100 mM sodium chloride, diffraction-quality crystals obtained from seeding |