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8CWJ

Fab arms of antibodies 4C12-B12 and CR3022 bound to pangolin receptor binding domain (pRBD)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-11-23
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9536
Spacegroup nameC 1 2 1
Unit cell lengths157.433, 144.097, 168.842
Unit cell angles90.00, 117.51, 90.00
Refinement procedure
Resolution48.690 - 2.449
R-factor0.1979
Rwork0.196
R-free0.23010
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)generic RBD and Fab
RMSD bond length0.002
RMSD bond angle0.640
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.11.1)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.69048.6902.490
High resolution limit [Å]2.44913.4102.450
Rmerge0.1100.0411.151
Rmeas0.1190.0441.239
Rpim0.0440.0170.457
Total number of observations517044038
Number of reflections1226207656080
<I/σ(I)>11.842.71.4
Completeness [%]100.097.8100
Redundancy76.87.2
CC(1/2)0.9980.9980.773
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293Equal volumes of protein complex (1:1:1 molar ratio, at ~ 5 mg/mL, in 25 mM Tris (pH 8.0), 200 mM NaCl) were combined with well solution (200 mM sodium citrate (pH 5.6), 12% (w/v) PEG6000).

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PDB entries from 2024-10-02

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