8CPR
G13D mutant of KRAS4b (2-169) bound to GDP with the switch-I in fully open conformation crystallized in sodium potassium phosphate buffer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2022-10-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976254 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 76.413, 76.413, 55.862 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.720 - 2.000 |
R-factor | 0.18288 |
Rwork | 0.179 |
R-free | 0.24809 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.453 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.686 | 2.146 |
High resolution limit [Å] | 2.001 | 2.001 |
Rmerge | 0.172 | 1.155 |
Rmeas | 0.182 | 1.222 |
Rpim | 0.059 | 0.394 |
Number of reflections | 9569 | 478 |
<I/σ(I)> | 8.6 | 2.1 |
Completeness [%] | 73.3 | |
Redundancy | 9.7 | |
CC(1/2) | 0.999 | 0.775 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1.4 M Na/K Phosphate pH around 8.8 OR 0.9 M Na/K Phosphate pH 9.1 (sodium potassium phosphate), 0.5 M Na/K Phosphate pH 8.3 |