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8CIZ

DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Mycoplanecin A.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, DESY BEAMLINE P11
Synchrotron sitePETRA III, DESY
BeamlineP11
Temperature [K]100
Detector technologyPIXEL
Collection date2022-02-24
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)1.033202
Spacegroup nameC 1 2 1
Unit cell lengths83.937, 150.050, 72.381
Unit cell angles90.00, 103.92, 90.00
Refinement procedure
Resolution51.280 - 2.270
R-factor0.2089
Rwork0.207
R-free0.23730
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.586
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.201-4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]75.0302.390
High resolution limit [Å]2.2702.270
Rmerge0.1150.660
Rmeas0.1240.716
Rpim0.0460.274
Total number of observations28012638813
Number of reflections398025767
<I/σ(I)>6.82.3
Completeness [%]99.0
Redundancy76.7
CC(1/2)0.9950.829
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP92930.2 M CaCl2 0.15 M MgCl2 8.75 % (v/v) Glycerol 17.5 % (w/v) PEG 3350 0.1 M Tris/HCl pH 9.0 Cryoprotection: 10 % (v/v) (2R,3R)-2,3-butanediol.

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PDB entries from 2024-10-30

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