8CIZ
DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Mycoplanecin A.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-24 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.033202 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 83.937, 150.050, 72.381 |
Unit cell angles | 90.00, 103.92, 90.00 |
Refinement procedure
Resolution | 51.280 - 2.270 |
R-factor | 0.2089 |
Rwork | 0.207 |
R-free | 0.23730 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.586 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.201-4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.030 | 2.390 |
High resolution limit [Å] | 2.270 | 2.270 |
Rmerge | 0.115 | 0.660 |
Rmeas | 0.124 | 0.716 |
Rpim | 0.046 | 0.274 |
Total number of observations | 280126 | 38813 |
Number of reflections | 39802 | 5767 |
<I/σ(I)> | 6.8 | 2.3 |
Completeness [%] | 99.0 | |
Redundancy | 7 | 6.7 |
CC(1/2) | 0.995 | 0.829 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 293 | 0.2 M CaCl2 0.15 M MgCl2 8.75 % (v/v) Glycerol 17.5 % (w/v) PEG 3350 0.1 M Tris/HCl pH 9.0 Cryoprotection: 10 % (v/v) (2R,3R)-2,3-butanediol. |