8CEY
Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH11233
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-11-25 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.95373 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 81.632, 81.763, 170.486 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.077 - 1.950 |
Rwork | 0.244 |
R-free | 0.28250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6g3y |
RMSD bond length | 0.007 |
RMSD bond angle | 1.348 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.077 | 1.990 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.102 | |
Rmeas | 0.110 | |
Rpim | 0.041 | |
Number of reflections | 83828 | 4543 |
<I/σ(I)> | 14.1 | |
Completeness [%] | 99.9 | |
Redundancy | 13.7 | 14 |
CC(1/2) | 0.999 | 0.372 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 294 | 10% w/v PEG4000, 20% v/v glycerol, 0.03M of each halide, 0.1M MES/imidazole pH 6.5. Morpheus screen, Molecular dimensions. |