Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8C59

CpG specific M.MpeI methyltransferase crystallized in the presence of 5-bromocytosine (converted to 5mC) and 5-methylcytosine containing dsDNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2016-09-05
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.91160
Spacegroup nameP 41 21 2
Unit cell lengths84.511, 84.511, 173.115
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.950 - 1.700
R-factor0.16782
Rwork0.167
R-free0.19278
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4dkj
RMSD bond length0.006
RMSD bond angle1.140
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareREFMAC
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.800
High resolution limit [Å]1.7001.700
Rmeas0.0410.980
Number of reflections6983811063
<I/σ(I)>27.872.15
Completeness [%]99.899.8
Redundancy8.788.52
CC(1/2)1.0000.822
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.629410% PEG 3350, 150 mM NaCl, 50 mM sodium citrate (final pH, 5.6). For cryoprotection glycerol was added to 25% v/v

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon