8BV2
Biological and structural analysis of new potent Integrase-LEDGF allosteric HIV-1 inhibitors
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-X |
Temperature [K] | 120 |
Detector technology | PIXEL |
Collection date | 2021-09-15 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 72.570, 72.570, 65.965 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.970 - 2.000 |
R-factor | 0.1985 |
Rwork | 0.196 |
R-free | 0.22620 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.024 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.072 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.029 | 0.199 |
Rmeas | 0.030 | 0.209 |
Rpim | 0.010 | 0.066 |
Number of reflections | 131582 | 13489 |
<I/σ(I)> | 57.43 | 11.2 |
Completeness [%] | 100.0 | 100 |
Redundancy | 9.5 | 9.9 |
CC(1/2) | 1.000 | 0.986 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 3 microliters of protein at 5 mg/mL in 50 mM MES pH5.5, 50 mM NaCl, 5 mM DTT mixed with 3 microliters of reservoir solution containing 0.1 M sodium cacodylate pH 6.5, 1.26 M ammonium sulfate. |