8BSF
CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN (RBD-beta variant) in complex with 3D2 Fab
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | MAX IV BEAMLINE BioMAX |
| Synchrotron site | MAX IV |
| Beamline | BioMAX |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-10-28 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.9762 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 104.693, 71.197, 121.245 |
| Unit cell angles | 90.00, 90.04, 90.00 |
Refinement procedure
| Resolution | 48.070 - 2.200 |
| R-factor | 0.19757 |
| Rwork | 0.196 |
| R-free | 0.22943 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.614 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.070 | 2.270 |
| High resolution limit [Å] | 2.200 | 2.200 |
| Rmerge | 0.096 | 1.568 |
| Rmeas | 0.104 | 1.690 |
| Rpim | 0.039 | 0.627 |
| Total number of observations | 317904 | 27580 |
| Number of reflections | 44882 | 3839 |
| <I/σ(I)> | 13 | 1.3 |
| Completeness [%] | 98.9 | |
| Redundancy | 7.1 | 7.2 |
| CC(1/2) | 0.998 | 0.575 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.04 M potassium dihydrogen phosphate 18 % PEG 8000 20 % glycerol |
