8BS6
Crystal structure of YTHDF3 disulfide mutant (closed conformation)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-13 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 65 |
Unit cell lengths | 61.900, 61.900, 81.810 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 32.520 - 1.200 |
R-factor | 0.1802 |
Rwork | 0.179 |
R-free | 0.19880 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.863 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.830 | 1.270 |
High resolution limit [Å] | 1.200 | 1.200 |
Number of reflections | 55256 | 8867 |
<I/σ(I)> | 16.83 | |
Completeness [%] | 100.0 | |
Redundancy | 8.36 | |
CC(1/2) | 0.999 | 0.799 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 2M Disodium malonate |