8BQ8
Crystal structure of Trichoplax Dlg PDZ2 domain in complex with Trichoplax Vangl peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.95372 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 64.673, 101.980, 106.063 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.340 - 2.700 |
R-factor | 0.225 |
Rwork | 0.222 |
R-free | 0.27150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g69 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.625 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.540 | 2.770 |
High resolution limit [Å] | 2.700 | 2.700 |
Number of reflections | 9739 | 716 |
<I/σ(I)> | 7.3 | |
Completeness [%] | 98.7 | |
Redundancy | 5.5 | |
CC(1/2) | 0.982 | 0.723 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 2.2 M ammonium sulphate, 0.1 M Bis-Tris, pH 6.5, 20% glucose |