8BK0
Crystal structure of human Ephrin type-A receptor 2 (EPHA2) Kinase domain in complex with LDN-211904
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000030 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 32.715, 107.722, 40.647 |
Unit cell angles | 90.00, 108.94, 90.00 |
Refinement procedure
Resolution | 38.480 - 1.700 |
R-factor | 0.16804 |
Rwork | 0.167 |
R-free | 0.19476 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8bio |
RMSD bond length | 0.010 |
RMSD bond angle | 1.553 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.450 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Number of reflections | 26328 | 3575 |
<I/σ(I)> | 11.1 | 1.9 |
Completeness [%] | 90.1 | |
Redundancy | 6.6 | |
CC(1/2) | 0.998 | 0.727 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% PEG3350, 10% ethylene glycol, 0.1M bis-tris-propane pH 6.5, 0.2M sodium nitrate |